Post #1498: COVID-19 seroprevalence survey shows an increase in unreported cases.

 

The CDC tests a few tens of thousand blood samples each month, looking for the antibodies that show that a person had some prior infection with COVID-19.  This set of blood samples is a sample of convenience — the blood in question was typically drawn for routine lab testing, and may or may not come close to presenting the actual cross-section of the U.S. population.  But it provides our best estimate of cumulative total of true number of total COVID-19 infections that have occurred in the U.S.

The method isn’t perfect.  Persons getting blood drawn for routine testing are not necessarily a random cross-section of the U.S. population.  By design, it will not separately count re-infections, even though those are counted as additional infections in the U.S. test count data.  (You either have antibodies or not, per these tests.)  And post-infection antibody levels may decline rapidly enough over time we may begin to lose count of some of those who were infected early in the pandemic.

That said, this is the best we’ve got for estimating the actual count of infections.  As opposed to the count of officially reported infections.

Prior to this most recent month, the seroprevalence data have been pretty boring.   Aside from a chance in methods that means you can’t look back prior to September 2021, the results consistently showed more-or-less one un-reported infection for every reported infection.  That is, the gray “ratio” line below hovered around a value of 1.0, plus or minus.

The most recent round of survey data — for the month ending at the end of February 2022, is noticeably different.

Source:  Calculated from CDC seroprevalence survey data, COVID data tracker accessed 5/2/2022.

With this most recent round, that ratio popped up to about 1.4 to 1.  Taken at face value, there was a large jump in the number of actual infections, relative to the cases reported in the official U.S. COVID-19 statistics.  Or, putting that another way, a large jump in unreported infections.

On the one hand, it’s tough to make too much out of one month of data.  The CDC publishes standard errors with these, but they seem to purely “statistical” standard errors (i.e., they only account for the size of the sample).  They don’t seem to try to account for possible “structural” errors (e.g., that the representativeness of the sample may vary from month to month).

On the other hand, this is cumulative.  When you see a change, it means that the change in the most current month was so large that you can see it, even through you are totaling up cases all the way back to the start of the pandemic.

And, ultimately, that’s what makes the most recent data (from blood drawn in February 2022) interesting.  There seemed to be a lot more un-reported cases.  The ratio of un-reported to reported total COVID-19 cases rose to 1.4, from previous highs around 1.2.

This is something that I’ve been on the lookout for, in the context of the growth of over-the-counter (home) testing.  E.g., Post #1431.  The one real-world example, where one New York county asked residents to self-report positives from home tests, found that positives on home tests accounted for about 20% of total positives (including official tests and self-reported over-the-counter tests).

The growth of re-infections under Omicron adds a small note of caution, however.  Last time I looked, re-infections accounted for 8 percent of all infections under Omicron, up from just one or two percent from prior variants.  That said, back-of-the-envelope, those reinfections (not captured separate in the seroprevalence data) wouldn’t be nearly large enough to account for the jump in the ratio of unreported to reported tests.

In any case, this February 2022 seroprevalence survey is the first hard data suggesting that there has been recent strong growth in un-reported COVID-19 cases in the U.S.  That really wouldn’t be a surprise, as (e.g.) the U.K. seems to have experienced a pretty significant divergence between the official count of new positive tests, and the actual new infection rate (Post #1478).

If this truly reflects an upsurge in unreported cases, this divergence should widen over the next few months.  I guess I’ll check in a month from now and see where this stands.

To me, the interesting question really relates to average severity of illness.  We’re still below 2000 new hospitalizations a day in the U.S.  Is that because there really are that few new cases?  Or are there lots of new cases, but some factors (e.g., vaccination rate, prior infection rate, or changes in the virus itself) are keeping the hospitalization rate down.

 

 

Post #1494: COVID-19 trend to 4/27/2022, now 16/100K.

 

The count of daily new COVID-19 cases continues to rise across the U.S.  We’re now at 16 new cases per 100K population per day.  The rate of increase has slowed to about 20 percent per week, down from 25 percent (or so) in the recent past.  The Northeast region — which led the way in this secondary Omicron wave — continues to see weekly increases at about half that rate. Continue reading Post #1494: COVID-19 trend to 4/27/2022, now 16/100K.

Post #1493: W&M COVID uptick continues

 

Source:  Calculated from the W&M COVID-19 dashboard, and Commonwealth of Virginia counts of COVID-19 cases by age group.

This is just a quick post to note that William and Mary is still seeing about five newly-reported COVID-19 cases per day.   That rate has been roughly steady for the past couple of weeks.  On a per-capita basis, that’s well above the officially-reported rate for the 18-24 age group for Virginia as a whole.

I guess I’ll track this through graduation, as I will be in Williamsburg for that, and I’d like to have some estimate of the risks (or lack thereof) before attending any indoor ceremonies.

My guess is, I’ll be so thrilled to see my daughter graduate, I’m not going to pass on any events, COVID or not.  But I’m still going to calculate the odds of exposure.

Post #1490: COVID-19, 14 /100K / day, but the Northeast is already starting to peak.

 

The U.S. is now at 14 new COVID-19 cases per 100K population per day, up 23% in the past seven days.  The weekly growth has been in that neighborhood for a while now.

This second U.S. Omicron wave secondary peak of the U.S. Omicron wave started mostly in the U.S. northeast and mid-Atlantic, with New York being the epicenter.  The interesting development today is that the Northeast has visibly reached an inflection point.  If that’s worst that the latest Omicron variant (BA.2.12.1) can bring on, then this second Omicron wave may go on for a while  yet, but it’s not likely to amount to much.

 

Continue reading Post #1490: COVID-19, 14 /100K / day, but the Northeast is already starting to peak.

Post #1488: COVID-19 trend to 4-20-2022, BA.2.12.1 variant-of-concern

 

Still around 13 new cases per 100K per day, still climbing at about 30 percent per week.  The only change today is that now, all the regions of the U.S. are showing increases in cases.

The more interesting news is that CDC is tracking a new sub-strain of Omicron (BA.2.12.1).  The incidence of this new strain appears to explain why New York/New England has had such a rise in cases, while much of the rest of the country has not.

Continue reading Post #1488: COVID-19 trend to 4-20-2022, BA.2.12.1 variant-of-concern

Post G22-011: Canning lids, from shortage to wide-mouth surcharge.

Above:  Used Ball lids.  The one on the left clearly shows the groove left by the canning jar.  The one on the right was boiled for 20 minutes, which flattened that groove considerably.  I picked up this tip boiling lids if you plan to re-use them from the blog A Traditional Life.

One of the many U.S. shortages that occurred during  the COVID-19 pandemic was a shortage of lids for use in home canning.  I’ve posted extensively on that here. Continue reading Post G22-011: Canning lids, from shortage to wide-mouth surcharge.

Post #1485: COVID-19, finishing out the data week

 

No change.  The U.S. now averages just over 11 new COVID-19 cases per 100K population per day.  Up 22% in the past seven days.

Data source for this and other graphs of new case counts:  Calculated from The New York Times. (2021). Coronavirus (Covid-19) Data in the United States. Retrieved 4/16/2022, from https://github.com/nytimes/covid-19-data.”  The NY Times U.S. tracking page may be found at https://www.nytimes.com/interactive/2020/us/coronavirus-us-cases.html

Nobody is entirely sure what fraction of cases is being captured by those official counts, what with cheap and plentiful over-the-counter testing and the recent end (I think) of federally-financed free testing for the uninsured.

One way to keep tabs on that is to look at the hospitalization data.   I believe that’s captured and reported completely independently of the official counts of positive tests.  (Though, of course, a positive result on a hospital-adminstered test will eventually find its way into the official counts of positives). If there are a lot of new cases not captured in the official counts, the count of hospitalizations ought to rise relative to the count of new cases.

That’s not happening.  My conclusion is that whatever the undercount of new cases might be, the undercount doesn’t appear to be changing rapidly.

Source:  Hospitalizations calculated from the US DHHS unified hospital data set.  Cases from NY times cited above.