Post #1190, no change in COVID-19 trend to 7/27/2021

 

No real change in trend, to speak of.  The U.S. now averages 19.5 new COVID-19 cases / 100,000 / day.

Extrapolating based on today’s data yields the following updated chart.  It’ll be between two and three weeks before we exceed the peak new case rate of the U.S. winter wave.

On the plus side, a reader has pointed out that the Missouri counties where this outbreak first took hold have definitely peaked.  Missouri as a state took longer because the outbreak had to spread elsewhere within that state.  But as of today, it definitely looks like Missouri is peaking.

Taking that as the pattern, I’m still expecting this wave to last about seven weeks, of which roughly four have already passed.  If that holds, this won’t get much worse than the peak of the winter wave, before it crests.  But if I had to guess, the risk is on the upside.  Given our slow response to the current wave, it would not surprise me if cases continued to rise for some period after that.

Needless to say, this is blind reasoning-by-analogy.  If you can find a more credible prediction, use it.

I’m now going to back to trying to asses the risks, for fully vaccinated individuals.  That’s a tough task, given the findings from Israel discussed in my last post.

On the one hand, if those results are true — if the effectiveness of the vaccines against a Delta infection fades to near nothing in six months — that changes all the calculations.  Vaccines still provide good protection against hospitalization and death, six months out.  But maybe not against infection per se.  And if vaccinated individuals can spread Delta fairly well if they are infected, that changes any “herd immunity” type calculation.

On the other hand, if those are spurious, and the world looks like the British results — immunity holds up well through six months — then the world is pretty much as I have described it in past posts.  Get vaccinated, and consider this pandemic a Darwin test for the unvaccinated.  And calculate your odds (of infection, hospitalization, death), and act based on your risk tolerance.

No matter who is right, it would be prudent to get yourself some N95s now, while they remain available through standard retail channels, if you don’t own some already.

Post #1189: Part 2B of the new COVID odds, the recent findings from Israel.

 

Today is the start of my “all things vaccine” series of posts.  I want some reasonably solid answers to  a handful of straightforward questions pertaining to U.S. individuals who are fully vaccinated against COVID-19.

For now, I’ll settle for answers to one thing:  What’s up with the data being reported from Israel?  In a nutshell, based on a small sample of cases, the Israeli Ministry of Health suggests that the Pfizer vaccine’s ability to protect against infection by the Delta variant shows a nearly linear decline over time, and is almost nil six months after vaccination.  Let me emphasize that finding is based on a very small sample, and that protection against hospitalization and death remain high, it’s only protection against “any infection” or “symptomatic infection” that appears to fall off rapidly in their data.

In this post, my goal is to channel the spirit of Light and Pillemer.  This all about research results that disagree.  It is not sufficient merely to say that results disagree, and shrug your shoulders.  The point of a review of the literature is to identify why they disagree, and figure out a way to test that.

I’ll give you my conclusion up front:  I’m not sure yet whether that Israeli finding is real, or is an artifact of methods.  But it sure has the “flavor” of a real finding.  There’s some modest evidence that maybe some of their result is due to having vaccinated the highest-risk individuals first.  (So that their earliest cohorts differ systematically from their later cohorts.)  And, oddly, the fading of immunity is far more pronounced in their younger population, which is exactly the opposite of what would be expected based on the weakening of the immune system with age.  But in the main, from what has been published, this has the appearance of being a true finding, including a rough dose-response relationship (immunity declines monotonically with time from vaccination).

So why hasn’t the U.S. found that?  Why haven’t the British found that?  Well, that’s plausibly because Israel was ahead of both of us in getting their population vaccinated.  The most profound loss of immunity in the Israeli data was for those fully vaccinated in January 2021.  Those individuals account for almost 20% of the Israeli population, but maybe a percent or two of the U.S. or British populations.  That was followed by those vaccinated in February 2021, and so on.  Because we were so late to vaccinate, compared to Israel, those cohorts aren’t a very large fraction of the U.S. or British populations, compared to their impact in Israel.

I’ll say something further:  Given how important this is, how large and rapid a deterioration of protection that Israel appears to have identified, and how huge a sample size of Delta-infected individuals we now have in the U.S.A., it should be a piece of cake for any large state with an outbreak to confirm or reject the tentative findings of the Israeli Ministry of Health.  Just match up the rosters of the vaccinated and those who tested positive, and cross-tabulate by month of vaccination.  If the results are as the Israelis suggest, the results will jump off the page.

Bottom line:  If I can figure that out, so can every state public health agency in the country.  It should not be long before the current uncertainty over this is settled.

If I had to summarize, I’d say that everyone agrees that the vaccines provide good protection, out to at least six months, against hospitalization (and probably against death) from Delta.  But there’s some evidence (from Israel, but not yet from elsewhere) to show that protection against any infection fades rapidly over that time period.  Separately, it’s now clear that those who have a “breakthrough” infection (i.e., infected despite being vaccinated) are perfectly capable of spreading the disease, just like anybody else who is infected.  (No surprise there.)  Though likely at a lower rate than the un-vaccinated.  But in the context of Delta, where viral loads appear very high, there may still be significant disease spread via breakthrough infections.

One part of this that I have not yet examined is how unusual those Israeli findings are.  Whenever something has been presented as some new aspect of COVID-19, what I have generally found is that other viruses do the same thing, it’s just that nobody ever much noticed.  (E.g., about 16 percent of flu infections are totally asymptomatic.)   I’m familiar with vaccines that require boosters at five-year intervals.  I’ve never heard of one that more-or-less wears off within six months.  Is there precedent for this or not, that’s a question I still need to research.

A final complication is the for-profit drug industry.  Based on what I read, the vaccine manufacturers are pushing hard for booster shots.  I can’t say the approval process is corrupt, but neither does it appear perfectly pure.  So, science aside, the force of money is behind concluding that booster shots are needed, and money can be a corrosive and corrupting force.

Here’s my take on it:  Exceptional claims require exceptional proof.   And now that the Israelis have found this, that finding should be replicated in short order.  Either Israel is the bellwether on this, because Israel vaccinated first.  Or those new Israeli results are an artifact of methods or (far less plausibly) simply small numbers of cases.  But it really should not take long for others to duplicate the basic result of an apparent and rapid decline in immunity against the Delta variant within during the first six months of immunization.


Does this mean you should get a booster shot?

Does this mean you should get a booster shot?  I’m not sure, and it’s not clear that you can get one in the U.S. at this point anyway.  That sort of thing requires FDA clearance.  Worse, it appears that the vaccine manufacturers are pushing for it, which means that there will be pressure to approve regardless of scientific merit.

There’s a cogent discussion of both sides at the University of Minnesota Center for Infectious Disease research and policy website.  It appears clear from that discussion that more-or-less the only evidence suggesting the need for a booster, at this point, is this recently released study of a small number of recent cases from Israel.  Hence, the Israeli results appear to play a pivotal role in the evolution of the booster shot issue in the near future.  Quoting CIDRAP:

Our official U.S. position on booster shots can be found at this URL.

Americans who have been fully vaccinated do not need a booster shot at this time. FDA, CDC, and NIH are engaged in a science-based, rigorous process to consider whether or when a booster might be necessary. This process takes into account laboratory data, clinical trial data, and cohort data – which can include data from specific pharmaceutical companies, but does not rely on those data exclusively. We continue to review any new data as it becomes available and will keep the public informed. We are prepared for booster doses if and when the science demonstrates that they are needed.

It gets back to that core question:  Is the effect the Israelis are seeing real, and neither we nor Great Britain is seeing it because we started vaccinating later?  Or is the Israeli effect some sort of artifact of methods, or a mere statistical fluke — plausibly because they vaccinated the most at-risk first?  That’s what FDA and CDC need to decide.  And I don’t think it ought to take them long to figure it out.


A quick summary of Israeli and British evidence so far.

If I pick up British studies of vaccine effectiveness, they seem to match what I expect to see.  And they roughly match the clinical trial results, plus or minus the usual differences between clinical trials and observational data.  And they match what I would call the consensus view in America, as well as matching what I would call the normal behavior of vaccines.

All of that research — both clinical trials and observational data — says the Pfizer and Moderna vaccines work pretty well, even against this new Delta variant.  And that immunity lasts for quite a long time.

In a nutshell, clinical trial data and observational data out of Great Britain suggest that the Pfizer vaccine is about 80% to 90% effective in preventing  symptomatic illness from the Delta variant.  And more effective than that at preventing severe illness, hospitalization, and death.

Here’s a table from their most recent vaccine surveillance report, available at this URL.  The results are a bit worse than the clinical trials estimate, but these are observational data — the people who did and didn’t get vaccinated might have been systematically different from one another.

Source:  British Ministry of Health, COVID vaccine surveillance report — Week 29, available at URL cited above.  Numbers are percents.

You have to go to their background methods document (at this URL) to get more information on methods, but even with that, there is no explicit mention of adjustments for age or comorbidities of the vaccinated population.  There’s just a passing mention that these effects did not vary much by age.

By contrast, there’s the information just released by the Israeli Ministry of Health.  Let me emphasize that this is  very new and based on few cases.  It boils down to “immunity to Delta mostly fades after six months” and as a corollary, overall immunity conferred against Delta is rather modest, once the vaccinated population ages into that six-months-plus state.  You can find the source document at this link.

As a result, the most recent press release from the Israeli Ministry of Health says that, at present, the Pfizer vaccine is only 41% effective in preventing symptomatic illness from the Delta variant. (Although, to be fair, that’s based on a tiny number of cases, and the 95% confidence interval is 9% – 61%).  But the vaccine remains quite effective at preventing severe illness and hospitalization.

Source:  Israeli Ministry of Health, URL cited above.

And, they get that result because they estimate that the protective effect of the vaccine fades rapidly over time.  Here’s the key graph.  The blue bar shows effectiveness of vaccine for those vaccinated on January 2021.

Source:  Israeli Ministry of Health, URL cited above.

So, what’s the true story?  Is the Israeli experience really different, or is this just an artifact of methods, or possibly even one of mis-reporting of the facts?

There are a few obvious differences between the British and Israeli experience.  The British used a mix of three different vaccines, while the Israelis used Pfizer only.  The British (I think) went in strict age order, while the Israelis prioritized the elderly, the high risk, and health care workers first.

But in this context, the main difference is that the Israelis were vaccinated earlier.  Their contingent of aged, fully-vaccinated individuals is a much higher proportion of the population.

At the end of January 2021, about 20% of the Israeli population was fully vaccinated.  At that same point, thanks in part to a British decision to prioritize the first shot over full vaccination, less than 1 percent of the British population was fully vaccinated.

And what about the U.S.A.?   Our experience is more like the British. We have relatively few vaccinated individuals who fall into those January and February cohorts.

That said, we have a huge population.  It seems like a simple cross-reference of vaccination rosters and test rosters could easily identify this cohort-age effect in the U.S.A.  Just take any large state with a lot of the Delta variant — California, say — match up the two lists, and check the breakthrough rate by month of vaccination.

Given our huge sample size compared to Israel, and the severity of the current outbreak, if the vaccine protection deteriorates to the degree shown in the Israeli findings, any large U.S. state ought to be able to identify that in a heartbeat. For sure, if I had access to the underlying data files, I’d have done it by now.


A few other thoughts.

These Israeli findings are from the same group that documented excellent success of the Pfizer vaccine against the Alpha variant (published in The Lancet.)  That suggests the likelihood of mere methodological error is small.  It also suggests that this change in due to the Delta variant (that is, they appear to have found no such effect for the Alpha variant).

In my limited experience, I’ve found that generational effects like this can arise in observational data for spurious reasons.  E.g., perhaps the people who opted in earliest are the ones most at risk.  Hence, during the next outbreak, they’ll have the worst results.

In this case, that’s clearly true.  Israel decided to vaccinate the elderly and those at high risk first.  (Along with health care workers).  As did most other nations, including the U.S.

In other words, there may be other risk factors that are correlated with the various monthly cohorts.  For example, if Delta was a particular problem for health care workers, the earliest cohorts if the Israeli vaccinated would show the highest rate of breakthrough infections.  That wouldn’t necessarily be due to fading of immunity. That could be due to the order in which occupations were given priority in vaccination.

I can only guess that the text of the document mentions this possibility.  That seems to be the gist of Fortune’s reporting of these results.  As I can’t read the text, I am not able to verify that.

In that regard, I note one oddity of the results:  This presumed “fading of immunity” effect for Delta is much more pronounced for those under age 60.  I would have thought, given that immune systems weaken with age, that it should have been the other way around.  If the vaccine-induced immunity is going to give out, you’d think it would give out first and most in the oldest.  But that was not true.

Source:  Israeli Ministry of Health, URL cited above.

From my experience, I can tell you something that I would like to see, if possible, from the Israeli Ministry of Health.  A lot of researchers find something where they expect to see it, and stop looking.  Few of them go on to make sure that they don’t find it where they don’t expect to see it.

Israel should repeat the analysis using the time period when the Alpha variant was dominant, if that is possible.  Pool the observations using a “proportional hazards” model if sample size is small.

If this apparent fading of immunity is really just a generational effect (an artifact of vaccinating the most at-risk first), that should have appeared for the Alpha variant as well.  But if it does not, that strongly increases the inference that this has something to do with the Delta variant, and is not an artifact of the ordering of vaccinations over time from most to least at-risk.

Finally, this isn’t my last word on this.  This is just getting the facts down on paper, and trying to figure out what causes the difference between the Israeli an and British findings.  I need to let all this percolate a bit before addressing it again.

Post #1188: The CDC finally awakens

 

Refer to Post #1175, from two weeks ago, for the background.

Today, easily two weeks after risk levels clearly and obviously exceeded those on May 13, 2021, the CDC has finally awakened to the current danger.  Sort of.  It is now being reported that the CDC will modify (not withdraw) its May 13, 2021 guidance stating that vaccinated people don’t need masks or social distancing. Continue reading Post #1188: The CDC finally awakens

Post #1187: COVID-19 trend to 7-26-2021, unchanged

 

Source for the image above is Clipart-library.com, but I’m almost certain that’s a Far Side cartoon, so the real attribution is Copyright Gary Larson, used here without permission.

No change in trend.  New cases continue to increase about 60% per week.  The U.S. is now seeing about 17.5 new COVID-19 cases / 100,000 / day.  Florida and Michigan haven’t reported new data yet, so the trend number might bump up a bit tomorrow. Continue reading Post #1187: COVID-19 trend to 7-26-2021, unchanged

Post #1186: Part 2A, the new COVID-19 numbers, the new COVID-19 odds.

This is a continuation of yesterday’s post.

Yesterday, I tried to get a grip on where we are in this U.S. fifth (Delta) COVID-19 wave.  I gave my best guess for where this is heading, in terms of new cases, hospitalizations, and deaths.

In this post, I start to look at “the odds”.  Mostly, what are the odds of getting serious ill if you are fully vaccinated?  But also a look at some other key ways in which the Delta variant is different from prior variants, and really has shifted all the relevant numbers.

Mostly, I want to get across one point:  Just because you haven’t seen something happen, so far, doesn’t mean it’s not going to happen now.  This wave is different, this variant is different.  This next set of posts will try to quantify just how different.  As I’ve said since early June, the numbers are against us on this one (Post #1160).

The new case count went vertical almost two weeks ago (Post #1173).  And that is not a surprise.  It falls right out of the numbers, when you combine this new more-infectious variant with a lack of COVID-19 hygiene.  From that post:

A particular concern, raised by a friend of my wife’s, is the rate at which your vaccine-related immunity fades over time, and the actual level of protection an aging vaccine gives against the Delta variant.  If you were vaccinated six months ago, should you be thinking about getting a booster shot?  Turns out, there’s a lot of apparently contradictory information about that.  That key question will take some time to sort out.  The key vaccine-booster issue is for tomorrow’s post.

Continue reading Post #1186: Part 2A, the new COVID-19 numbers, the new COVID-19 odds.

Post #1185: Getting oriented for the COVID-19 Delta wave

Panic early and often

The next opportunity to check the trend in new U.S. COVID-19 cases will be Tuesday.  That’s because the great majority of states have stopped reporting that information on weekends.

In the meantime, this post is my way of stepping back and getting oriented for what I think is coming next.   And to ask myself if there’s anything I need to do to get ready for it. Continue reading Post #1185: Getting oriented for the COVID-19 Delta wave

Post #1184: COVID-19 trend to 7/23/2021: A ray of light.

 

This was no material change in the trend in new cases today.

New COVID-19 cases increased just over 60% in the past seven days.

Louisiana and Florida are virtually tied for the #1 spot, with 51.6 and 51.7 new COVID-19 cases / 100,000 population / day, respectively.

The U.S. as a whole now stands at 15.5 new cases / 100K / day.

Accordingly, I’m sticking with my prior predictions for this wave of COVID-19.  This is shaping up to be the worst ever in the U.S.  If current growth in new cases persists, Louisiana will hit its all-time record for daily new COVID-19 cases next week.  Florida will do so the week afterward.  If nothing changes, this is going to get ugly, soon.

Continue reading Post #1184: COVID-19 trend to 7/23/2021: A ray of light.

Post #1181: COVID-19 trend to 7/20/2021

 

Today’s COVID-19 status update meets expectations.

  • New COVID-19 cases grew just under 50% over the last seven days.
  • Florida swooped into the #2 spot with 38 new cases per 100,000 per day, just a hair below the rate in Arkansas.
  • Unvaccinated people are the minority of the U.S. population but make up the vast majority of those requiring medical care and those dying from COVID-19.
  • New cases are up everywhere, and growth rates cluster tightly around that national rate.  When that happens — when there’s no dispersion across the states, and everybody’s headed in the same direction, at the same rate, that has been a signal that we can expect this to continue for some time yet.
  • CDC came out with updated estimates of the prevalence of the Delta variant.  It’s much higher than it was.  And still rising.  Who would have guessed?
  • Americans are still sleep-walking into this wave.  Maybe we’ve hit a bottom in terms of (e.g.) mask use, maybe not.  Not enough to matter, anyway.

I once said that this fifth wave couldn’t possibly be as bad as the third (winter) wave.  My reasoning was simple.  So many people were already immune, the virus would run out of bodies before it got that bad again.

Now, I’m not so sure.  This wave seems to be combining an extra-infectious virus with some extra-special willful stupidity.  Stupidity at a level that we really haven’t seen in the U.S. since the start of the pandemic.  And in the race between stupidity and vaccination, it seems to me that stupidity is winning. Continue reading Post #1181: COVID-19 trend to 7/20/2021